Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-partition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-partition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Our approach offers a number of advantages over previous methods.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the logpartition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Probabilistic graphical models (PGMs) provide a compact representation of knowledge that can be queried in a flexible way: after learning the parameters of a graphical model, new probabilistic queries can be answered at test time without retraining. However, learning undirected graphical models is notoriously hard due to the intractability of the partition function. For directed models, a popular approach is to use variational autoencoders, but there is no systematic way to choose the encoder architecture given the PGM, and the encoder only amortizes inference for a single probabilistic query (i.e., new queries require separate training). We introduce Query Training (QT), a systematic method to turn any PGM structure (directed or not, with or without hidden variables) into a trainable inference network. This single network can approximate any inference query. We demonstrate experimentally that QT can be used to learn a challenging 8-connected grid Markov random field with hidden variables and that it consistently outperforms the state-of-the-art AdVIL when tested on three undirected models across multiple datasets.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-partition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Typical amortized inference in variational autoencoders is specialized for a single probabilistic query. Here we propose an inference network architecture that generalizes to unseen probabilistic queries. Instead of an encoder-decoder pair, we can train a single inference network directly from data, using a cost function that is stochastic not only over samples, but also over queries. We can use this network to perform the same inference tasks as we would in an undirected graphical model with hidden variables, without having to deal with the intractable partition function. The results can be mapped to the learning of an actual undirected model, which is a notoriously hard problem. Our network also marginalizes nuisance variables as required. We show that our approach generalizes to unseen probabilistic queries on also unseen test data, providing fast and flexible inference. Experiments show that this approach outperforms or matches PCD and AdVIL on 9 benchmark datasets.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-partition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Many problems in machine learning are naturally expressed in the language of undirected graphical models. Here, we propose black-box learning and inference algorithms for undirected models that optimize a variational approximation to the log-likelihood of the model. Central to our approach is an upper bound on the log-partition function parametrized by a function q that we express as a flexible neural network. Our bound makes it possible to track the partition function during learning, to speed-up sampling, and to train a broad class of hybrid directed/undirected models via a unified variational inference framework. We empirically demonstrate the effectiveness of our method on several popular generative modeling datasets.

Undirected graphical models are applied in genomics, protein structure prediction, and neuroscience to identify sparse interactions that underlie discrete data. Although Bayesian methods for inference would be favorable in these contexts, they are rarely used because they require doubly intractable Monte Carlo sampling. Here, we develop a framework for scalable Bayesian inference of discrete undirected models based on two new methods. The first is Persistent VI, an algorithm for variational inference of discrete undirected models that avoids doubly intractable MCMC and approximations of the partition function. The second is Fadeout, a reparameterization approach for variational inference under sparsity-inducing priors that captures a posteriori correlations between parameters and hyperparameters with noncentered parameterizations. We find that, together, these methods for variational inference substantially improve learning of sparse undirected graphical models in simulated and real problems from physics and biology.